Commits · b5c62ff0273719a93909de7bff41991c92900079 · bioinfo / ngs_tools

Sep 22, 2015
- moved up qc section · b5c62ff0
  Holger Brandl authored 9 years ago
  
  b5c62ff0
Sep 21, 2015
- configurable output prefix · 9cf14439
  Holger Brandl authored 9 years ago
  
  9cf14439
- imprved CLI · e4398a26
  Holger Brandl authored 9 years ago
  
  e4398a26
- tweaked names in star count matrix aggregation · 6c36180a
  Holger Brandl authored 9 years ago
  
  6c36180a
- update core dependencies · caeeea12
  Holger Brandl authored 9 years ago
  
  caeeea12
- polished version · d801a060
  Melanie Schneider authored 9 years ago
  
  d801a060
Sep 18, 2015
- fixed diffbind analysis by timepoint · dac77bc0
  Holger Brandl authored 9 years ago
  
  dac77bc0
- fixed fc analysis for replicated scheme · 8f5633ac
  Holger Brandl authored 9 years ago
  
  8f5633ac
- impl differntial binding for pooled results · 371c2eac
  Holger Brandl authored 9 years ago
  
  371c2eac
- simplified generated job script · 25ed97df
  Holger Brandl authored 9 years ago
  
  25ed97df
Sep 17, 2015
- more flexible bam correlation wrapper · 63b17d41
  Holger Brandl authored 9 years ago
  
  63b17d41
- upgraded core libs to v1.14 · 609235c3
  Holger Brandl authored 9 years ago
  
  609235c3
- increased bowtie versino to 2.2.5 · 2d1269ee
  Holger Brandl authored 9 years ago
  
  2d1269ee
Sep 16, 2015
- started 2nd krause batch processing · 70b801e5
  Holger Brandl authored 9 years ago
  
  70b801e5
Sep 15, 2015
- continued intersection analysis · cbf6758d
  Holger Brandl authored 9 years ago
  
  cbf6758d
- commented out enrichement section · 41344d37
  Holger Brandl authored 9 years ago
  
  41344d37
- smoothed deseq workflow · a7cb6336
  Holger Brandl authored 9 years ago
  
  a7cb6336
- changed to use DT · 9c606c16
  Holger Brandl authored 9 years ago
  
  9c606c16
Sep 11, 2015
- updated version · a7feaa6c
  Melanie Schneider authored 9 years ago
  
  a7feaa6c
- Merge branch 'master' of ssh://git-srv1/local/git/bioinformatics · 8be8257b
  Melanie Schneider authored 9 years ago
  
  8be8257b
- new featcounts_deseq · c8946c90
  Melanie Schneider authored 9 years ago
  
  c8946c90
Sep 08, 2015
- continued STAR evaluation · d883b42a
  Holger Brandl authored 9 years ago
  
  d883b42a
- added warning if index already existis · 63d9ea90
  Holger Brandl authored 9 years ago
  
  63d9ea90
Sep 07, 2015
- cont star integration · 0cebbcb3
  Holger Brandl authored 9 years ago
  
  0cebbcb3
- improved star integration · cebd3cb7
  Holger Brandl authored 9 years ago
  
  cebd3cb7
Sep 03, 2015
- Merge branch 'master' of git-srv1:/local/git/bioinformatics · 49599782
  Holger Brandl authored 9 years ago
  
  49599782
- updated star version · ae76b665
  Holger Brandl authored 9 years ago
  
  ae76b665
- added bigwig helper · 49b54120
  Holger Brandl authored 9 years ago
  
  49b54120
Aug 31, 2015
- cont new count workflow · 65cfe1d9
  Melanie Schneider authored 9 years ago
  
  65cfe1d9
Aug 25, 2015
- improved clustering · 6d030ab4
  Holger Brandl authored 9 years ago
  
  6d030ab4
Aug 24, 2015
- added todos · bb900e40
  Holger Brandl authored 9 years ago
  
  bb900e40
Aug 20, 2015
- bug fixes · b7c64d57
  Holger Brandl authored 9 years ago
  
  b7c64d57
- cont cp report · b1e484d5
  Holger Brandl authored 9 years ago
  
  b1e484d5
- cont. cp enrichment tool · 3f3d952d
  Holger Brandl authored 9 years ago
  
  3f3d952d
Aug 19, 2015
- started cluster profiler enrichement · bf6699e5
  Holger Brandl authored 9 years ago
  
  bf6699e5
Jul 30, 2015
- added cuffdiff report without enrichment analysis · 3f882101
  Holger Brandl authored 9 years ago
  
  3f882101
Jul 29, 2015
- continued diffex test · 3c6c0c23
  Holger Brandl authored 9 years ago
  
  3c6c0c23
Jul 23, 2015
- cont deseq workflow · 09caee9d
  Holger Brandl authored 9 years ago
  
  09caee9d
- cont. deseq workflow · 846c8634
  Holger Brandl authored 9 years ago
  
  846c8634
Jul 21, 2015
- star debugging · 2f5f16d4
  Holger Brandl authored 9 years ago
  
  2f5f16d4