GitLab

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

repo to contain example notebooks to run DeepContrast

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

A web service for calculating the Levenshtein distance between two sequences

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

Jenkins pipelines

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This software package implements the identification of robust topological defects.

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.