Explore projects
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Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"
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Scientific Computing / bioimage_team / CourseMaterialImageAnalysis
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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Sbalzarini Lab / Software / Math / FaspHeuristic
MIT LicenseLibrary implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)
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Backend APIs (Flask) exposing data from database in RESTful format
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bioinfo / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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dibrov / chromosome_size
MIT LicenseUpdated -
mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"
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MATLAB code for Lp-Adaptation: Design Centering and Volume Approximation
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infrastructure / grails-plugin-jmesa
BSD 3-Clause "New" or "Revised" LicenseUpdated -
New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."
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Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021
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pSSAlib: Stochastic chemical network and reaction-diffusion simulation
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.
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