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openfpm_pdata
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MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group. More information about it can be found on official webpage of MOSAIC group.
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A collection of tools to process and manipulate high-throughput sequencing data
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Implementation of 2D unet. Use as base for user projects.
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R utilities for data analysis and bioinformatics
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3day Image analysis course given externally in 2020-12.
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scripts related to the publication
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Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation