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Similarity/Homology Assessment by Relating K-mers

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Theory analysis and code for studying Drosophila wing disc eversion

Implementation of 2D unet. Use as base for user projects.

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Improving contrast in confocal data by degrading image with model of light scattering

This software package implements the identification of robust topological defects.

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs