Explore projects

Napari-stress based image analysis pipeline for measuring physical stress in 68 microscopy recordings of oil droplets embedded in liver organoids.

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Jenkins pipelines

multiparameter persistence

Similarity/Homology Assessment by Relating K-mers

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."

MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.

A collection of tools to process and manipulate high-throughput sequencing data