Explore projects
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Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation
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Improving contrast in confocal data by degrading image with model of light scattering
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This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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This repository is all about simulating flow driven pruning in biological flow networks.
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Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"
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Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021
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Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.
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Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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