Explore projects

Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Implementation of 2D unet. Use as base for user projects.

PDE inference from limited spatio-temporal data

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

This repository contains source codes and notebook demos for trainin STENCIL-NET.

This repository contains the image analysis pipelines for bile canaliculi analysis and mesenchyme counting associated with the paper "Mouse liver assembloids model periportal architecture and biliary fibrosis"

This software package implements the identification of robust topological defects.