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dibrov / chromosome_size
MIT LicenseUpdated -
bioinfo / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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MosaicSuite is a software for ImageJ/Fiji with image-processing algorithms developed at the MOSAIC group.
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"
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bioinfo / datautils
BSD 2-Clause "Simplified" LicenseR utilities for data analysis and bioinformatics
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Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"
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Scientific Computing / bioimage_team / stardist_nnet_explore
BSD 3-Clause "New" or "Revised" LicenseUpdated -
pSSAlib: Stochastic chemical network and reaction-diffusion simulation
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walker / NNet_simple
BSD 3-Clause "New" or "Revised" LicenseUpdated -
hidra fork, intended to exist until desy's hidra goes full open source on github or similar
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steinbac / ngs_tools
BSD 3-Clause "New" or "Revised" LicenseA collection of tools to process and manipulate high-throughput sequencing data
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krishna / Laminin_network
Creative Commons Zero v1.0 UniversalHexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.
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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.
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