Explore projects

Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Sequencing analysis pipeline for our paper "Human liver cholangiocyte organoids capture the heterogeneity of in vivo liver ductal epithelium"

Implementation of 2D unet. Use as base for user projects.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Theory analysis and code for studying Drosophila wing disc eversion

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.