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Scientific Computing / Kalebic_et_al_progenitors_processes_analysis
BSD 3-Clause "New" or "Revised" LicenseComplementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".
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Scientific Computing / bioimage_team / Intro_ImageAnalysis_2021-05
Creative Commons Attribution Non Commercial 4.0 InternationalImage analysis course (20h): Concepts and hands-on with Fiji and Ilastik.
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Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells
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Analysis of ARE in liver tissue. with Julien Delpierre
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Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.
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Scientific Computing / Schuhmacher et al 2020. Live cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities.
BSD 3-Clause "New" or "Revised" LicenseLive cell lipid biochemistry reveals a role of diacylglycerol side chain composition for cellular lipid dynamics and protein affinities
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Scientific Computing / Viktorinova_et_al_Actomyosin_dynamics
Creative Commons Attribution 4.0 InternationalAnalysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak
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MATLAB implementation of image naturalization
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This software package implements the identification of robust topological defects.
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steinbac / compass-github-pull
BSD 3-Clause "New" or "Revised" Licensedrop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime
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Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)
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This repository is all about simulating flow driven pruning in biological flow networks.
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