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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

This repository is all about simulating flow driven pruning in biological flow networks.

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

collections of hackyhour examples and documentation

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

lipid lipid correlation network using pearson correlation + hierarchical clustering based on cosine sim drawing network using gml

3day Image analysis course given externally in 2020-12.

Repository containing the Matlab code used in Iglesias et al - Charge density reduction promotes ribozyme activity in RNA-peptide protocells via fluidization and magnesium partitioning.