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PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

openfpm_pdata

Web frontend (VueJs) and CMS (Strapi)

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

A collection of tools to process and manipulate high-throughput sequencing data

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Documentations for CD-CODE project

Backend APIs (Flask) exposing data from database in RESTful format

Plugin to fit and unwrap ellipsoid surfaces

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.