Explore projects

Similarity/Homology Assessment by Relating K-mers

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

private repo with testing jupyter notebooks

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

Theory analysis and code for studying Drosophila wing disc eversion

Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"

This repository contains source codes and notebook demos for trainin STENCIL-NET.

PDE inference from limited spatio-temporal data

This software package implements the identification of robust topological defects.

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells