Explore projects

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Napari-stress based image analysis pipeline for measuring physical stress in 68 microscopy recordings of oil droplets embedded in liver organoids.

A Python library for reducing differential equations and dynamical systems.

multiparameter persistence

parallel parameter homotopy through bertini

Sequencing analysis pipeline for our paper "Human liver cholangiocyte organoids capture the heterogeneity of in vivo liver ductal epithelium"

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"