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dibrov / chromosome_size
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mirandaa / LipidXplorer2
BSD 3-Clause "New" or "Revised" LicenseCompletly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files
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tothpetroczylab / Picnic
BSD 3-Clause "New" or "Revised" LicensePICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.
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PDE inference from limited spatio-temporal data
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Improving contrast in confocal data by degrading image with model of light scattering
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This repository is all about simulating flow driven pruning in biological flow networks.
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Huch lab / prior_et_al_2019
MIT LicenseSupplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"
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rhaase / int_sys_2020
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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This software package implements the identification of robust topological defects.
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Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells
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rhaase / lecture_applied_bioimage_analysis
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
rhaase / ABIA_Prague_2019
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.
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This repository contains source codes and notebook demos for trainin STENCIL-NET.
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