GitLab

Official MOSAIC Group software repository.

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

Jenkins pipelines

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

hyrdrodynamics methods for kirchhoff graphs

Code used to prepare events plots for controls and morpholinos experiments for lineage analysis

Script for publication - Matrix topology guides collective cell migration in vivo

Little tiny model of Ath5-Ptf1a interactions in fate decisions in the embryonic zebrafish retina.

Filter .fasta file by accession Number

drop-in header-only C++ library to detect hardware capabilities at runtime and at compiletime

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

MATLAB implementation of image naturalization

MATLAB Toolbox for cell-outline segmentation in phase-contrast images